Co-expression analysis

Gene ID	Contig3403_s_at
Gene name
Homology with Arabidopsis	Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=2e-2)
Module size	14 genes
NF	0.45
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.96	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig3229_s_at	Contig3229	-	-	7e+0	At5g54410	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig2846_at	Contig2846	-	-	3e-5	At2g27285	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig6152_at	Contig6152	-	-	7e-2	At3g59140	ATMRP14	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig4873_s_at	Contig4873	-	-	4e+0	At5g17847	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.97	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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