Co-expression analysis

Gene ID	Contig3373_s_at
Gene name
Homology with Arabidopsis	Similar to At2g18700: ATTPS11 (HF=5e-5)
Module size	6 genes
NF	0.75
%ile	94.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.87	Contig3373_s_at	Contig3373	-	-	5e-5	At2g18700	ATTPS11	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.91	Contig9859_at	Contig9859	-	-	6e+0	At5g66930	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	Contig3372_s_at	Contig3372	-	-	6e-2	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig11663_at	Contig11663	-	-	3e-2	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	Contig3375_at	Contig3375	-	-	1e-12	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.91	HB22H13r_s_at	HB22H13r	-	-	2e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.9	99.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
30.9	99.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
24.8	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.7	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.8	99.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.2	99.5	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
14.2	99.5	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.7	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.0	99.4	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.6	99.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.6	99.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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