Co-expression analysis

Gene ID	Contig3365_at
Gene name
Homology with Arabidopsis	Similar to At1g09100: RPT5B (26S proteasome AAA-ATPase subunit RPT5B) (HF=2e-85)
Module size	6 genes
NF	0.49
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	56.4	0.88	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.88	Contig8940_s_at	Contig8940	-	-	2e-3	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig6572_at	Contig6572	-	-	8e-1	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig7447_at	Contig7447	-	-	2e-7	At4g10790	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.87	Contig18600_at	Contig18600	-	-	8e-5	At1g72520	lipoxygenase, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig11781_at	Contig11781	-	-	5e-3	At5g03460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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