Co-expression analysis

Gene ID Contig3365_at
Gene name
Homology with ArabidopsisSimilar to At1g09100: RPT5B (26S proteasome AAA-ATPase subunit RPT5B) (HF=2e-85)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4356.40.88Contig3365_atContig3365--2e-85At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.7790.80.88Contig8940_s_atContig8940--2e-3At3g02000ROXY1O.I.H.G.S.X.
0.5774.90.90Contig6572_atContig6572--8e-1At5g07100WRKY26O.I.H.G.S.X.
0.4458.90.91Contig7447_atContig7447--2e-7At4g10790UBX domain-containing proteinO.I.H.G.S.X.
0.4255.20.87Contig18600_atContig18600--8e-5At1g72520lipoxygenase, putativeO.I.H.G.S.X.
0.2326.10.90Contig11781_atContig11781--5e-3At5g03460unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM372954genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.893.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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