Co-expression analysis

Gene ID	Contig3346_at
Gene name
Homology with Arabidopsis	Similar to At2g29850: unknown protein (HF=6e-2)
Module size	7 genes
NF	0.15
%ile	18.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.84	Contig3346_at	Contig3346	-	-	6e-2	At2g29850	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	Contig7195_at	Contig7195	-	-	5e-1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	HVSMEb0008P10r2_at	HVSMEb0008P10r2	-	-	8e-2	At1g49610	F-box family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.85	EBpi03_SQ001_I14_at	EBpi03_SQ001_I14	-	-	1e+1	At5g03880	electron carrier	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.84	Contig3574_s_at	Contig3574	-	-	4e+0	At1g15757	-	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.86	Contig6493_at	Contig6493	-	-	6e-2	At4g31080	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.86	Contig7692_s_at	Contig7692	-	-	8e-8	At4g16765	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.0	97.9	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
4.1	96.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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