Co-expression analysis

Gene ID	Contig3339_at
Gene name
Homology with Arabidopsis	Similar to At1g64720: CP5 (HF=9e-6)
Module size	6 genes
NF	0.02
%ile	2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.75	Contig3339_at	Contig3339	-	-	9e-6	At1g64720	CP5	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.72	HVSMEf0005G15r2_x_at	HVSMEf0005G15r2	-	-	5e+0	At5g16567	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.75	Contig24338_at	Contig24338	-	-	4e-1	At3g07600	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.81	Contig5253_at	Contig5253	-	-	8e-7	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.75	Contig12160_at	Contig12160	-	-	2e-7	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.77	Contig14280_at	Contig14280	-	-	5e-5	At1g55720	ATCAX6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.5	91.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.3	90.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.3	90.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.3	90.9	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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