Co-expression analysis

Gene ID	Contig3338_s_at
Gene name
Homology with Arabidopsis	Similar to At3g23080: - (HF=8e-4)
Module size	6 genes
NF	0.58
%ile	80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.95	Contig3338_s_at	Contig3338	-	-	8e-4	At3g23080	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig13515_at	Contig13515	-	-	8e-7	At5g51795	Kin17 DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	rbaal30a15_s_at	rbaal30a15	-	-	7e+0	At4g16008	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.95	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig10496_at	Contig10496	-	-	1e-17	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.6	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.2	98.0	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.3	96.4	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.6	95.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage