Co-expression analysis

Gene ID	Contig3337_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59840: Ras-related GTP-binding family protein (HF=5e-50)
Module size	6 genes
NF	0.72
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	99.6	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.6039.1.A1_at, orthologous to the query gene, Contig3337_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.6039.1.A1_at	At5g59840	-	-	9e-65	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.5220.1.S1_at	At5g59840	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.69	86.5	Zm.18590.1.A1_at	At5g59840	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.5441.1.S1_at	At5g59840	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.16482.2.A1_at	At5g59840	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.18903.1.A1_at	At5g59840	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	ZmAffx.1097.1.S1_at	At5g59840	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.4561.2.A1_x_at	At5g59840	-	-	6e+0	At5g65520	binding	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.3484.1.A1_at	At5g59840	hypothetical protein LOC100273241	-	2e+0	At1g67700	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5917.1.A1_a_at	At5g59840	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.19059.1.A1_at	At5g59840	hypothetical protein LOC100193008	-	4e-1	At1g78170	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.10315.1.S1_at	At5g59840	uncoupling protein	-	6e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.4099.2.A1_s_at	At5g59840	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.1546.3.A1_x_at	At5g59840	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17772.1.S1_at	At5g59840	-	-	6e-2	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.6011.1.A1_at	At5g59840	hypothetical protein LOC100280191	-	2e-10	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2967.1.A1_at	At5g59840	-	-	1e+0	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.12132.3.S1_a_at	At5g59840	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6418.1.S1_at	At5g59840	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.4462.1.A1_at	At5g59840	-	-	1e+1	At4g00342	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.10082.1.A1_at	At5g59840	hypothetical protein LOC100279529	-	3e-10	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.9792.1.A1_at	At5g59840	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.11907.1.S1_at	At5g59840	hypothetical protein LOC100194010	-	2e-15	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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