CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig3337_s_at

Gene name
Homology with Arabidopsis Similar to At5g59840: Ras-related GTP-binding family protein (HF=5e-50)

Module size 6 genes

NF 0.72

%ile 92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig3337_s_at Contig3337 - - 5e-50 At5g59840 Ras-related GTP-binding family protein O.I. H.G. S.X.
0.91 98.1 0.95 HF01J12w_s_at HF01J12w - - 4e-1 At2g32310 - O.I. H.G. S.X.
0.83 94.0 0.95 Contig5153_at Contig5153 chloroplast inner envelope protein-like - 3e+0 At5g46860 VAM3 O.I. H.G. S.X.
0.80 92.5 0.96 Contig2776_at Contig2776 - - 5e-20 At3g22890 APS1 (ATP SULFURYLASE 1) O.I. H.G. S.X.
0.47 62.2 0.95 rbags5f04_s_at rbags5f04 - - 2e+0 At3g61678 unknown protein O.I. H.G. S.X.
0.35 45.1 0.96 Contig8498_at Contig8498 - - 6e-8 At4g36390 radical SAM domain-containing protein / TRAM domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 99.6 GSM398253 Martin_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1 98.0 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM398264 HS41-1_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2 97.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.4 96.6 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0 96.0 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0 96.0 GSM398250 Martin_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.14585.3.S1_at, orthologous to the query gene, Contig3337_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 PtpAffx.14585.3.S1_at At5g59840 hypothetical protein - 2e-133 At3g46060 ATRAB8A O.I. H.G. S.X.
0.75 94.1 PtpAffx.111323.1.S1_s_at At5g59840 hypothetical protein - 3e-14 At4g02050 sugar transporter, putative O.I. H.G. S.X.
0.71 92.6 Ptp.1953.1.S1_at At5g59840 hypothetical protein - 8e-18 At5g43460 lesion inducing protein-related O.I. H.G. S.X.
0.67 91.1 Ptp.1635.1.S1_s_at At5g59840 hypothetical protein - 4e-51 At3g53620 AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4) O.I. H.G. S.X.
0.60 86.0 PtpAffx.103624.1.A1_at At5g59840 - - 1e-3 At5g54130 - O.I. H.G. S.X.
0.55 82.2 PtpAffx.119069.1.S1_at At5g59840 - - 1e+0 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) O.I. H.G. S.X.
0.50 78.6 Ptp.1790.1.S1_at At5g59840 hypothetical protein - 2e-12 At2g43040 NPG1 (no pollen germination 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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