Co-expression analysis

Gene ID	Contig3337_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59840: Ras-related GTP-binding family protein (HF=5e-50)
Module size	6 genes
NF	0.72
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	99.6	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.91170.1.S1_x_at, orthologous to the query gene, Contig3337_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	GmaAffx.91170.1.S1_x_at	At5g59840	-	-	5e-58	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.92555.1.S1_s_at	At5g59840	-	-	2e-113	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.8031.1.S1_at	At5g59840	-	-	4e-76	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.14686.2.S1_s_at	At5g59840	-	-	5e-24	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.16051.1.S1_at	At5g59840	-	-	6e-25	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.93620.1.S1_s_at	At5g59840	-	-	3e-19	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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