Co-expression analysis

Gene ID Contig3337_s_at
Gene name
Homology with ArabidopsisSimilar to At5g59840: Ras-related GTP-binding family protein (HF=5e-50)
Module size 6 genes
NF 0.72
%ile 92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3337_s_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.9198.10.95HF01J12w_s_atHF01J12w--4e-1At2g32310-O.I.H.G.S.X.
0.8394.00.95Contig5153_atContig5153chloroplast inner envelope protein-like-3e+0At5g46860VAM3O.I.H.G.S.X.
0.8092.50.96Contig2776_atContig2776--5e-20At3g22890APS1 (ATP SULFURYLASE 1)O.I.H.G.S.X.
0.4762.20.95rbags5f04_s_atrbags5f04--2e+0At3g61678unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig8498_atContig8498--6e-8At4g36390radical SAM domain-containing protein / TRAM domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.399.6GSM398253Martin_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.198.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.496.6GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.096.0GSM311256hsp5_without_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.096.0GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g59840, orthologous to the query gene, Contig3337_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g59840836105Ras-related GTP-binding family proteinF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.3846.7At5g23090832373NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)F:transcription factor activity;P:regulation of transcription;C:nucleus;MPFOO.I.H.G.S.X.
0.3338.1At3g50360824198ATCEN2 (CENTRIN2)F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MFPOBVO.I.H.G.S.X.
0.3235.7At2g10950815559BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.H.G.S.X.
0.3133.8At5g51700835244PBS2 (PPHB SUSCEPTIBLE 2)Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla. Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.O.I.H.G.S.X.
0.2930.3At2g17030816206F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.2At5g22950832359VPS24.1F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAO.I.H.G.S.X.
0.2726.2At1g26300839171BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFAO.I.H.G.S.X.
0.2624.4At5g19910832113SOH1 family proteinF:RNA polymerase II transcription mediator activity;P:regulation of transcription;C:mediator complex;MFOPO.I.H.G.S.X.
0.2624.4At1g54340841875ICDH (ISOCITRATE DEHYDROGENASE)NADP-specific isocitrate dehydrogenase (ICDH)O.I.H.G.S.X.
0.2522.6At4g38930830048ubiquitin fusion degradation UFD1 family proteinF:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;OFMPO.I.H.G.S.X.
0.2420.7At2g43280818930far-red impaired responsive family protein / FAR1 family proteinF:unknown;P:response to red or far red light;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.3At5g37780833756CAM1 (CALMODULIN 1)encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.O.I.H.G.S.X.
0.2217.5At3g55140824680pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:unknown;BPFOO.I.H.G.S.X.
0.2217.5At5g19430832063zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOVFO.I.H.G.S.X.
0.2217.5At4g24550828557clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.2217.5At4g14600827108-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFOO.I.H.G.S.X.
0.2115.8At1g43890840987ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)ras-related small GTPaseO.I.H.G.S.X.
0.2014.4At1g68160843144unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POFO.I.H.G.S.X.
0.2014.4At4g24740828576AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.O.I.H.G.S.X.
0.2014.4At1g77220844058unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.2014.4At3g11200820290AL2 (ALFIN-LIKE 2)AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.2014.4At3g12800820462SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome, plasma membrane;BOMFPAVO.I.H.G.S.X.
0.1912.7At5g59140836032SKP1 family proteinF:protein binding;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.1912.7At1g30300839910unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPAFO.I.H.G.S.X.
0.1912.7At4g14965827155AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)F:heme binding;P:unknown;C:endomembrane system;MFPOO.I.H.G.S.X.
0.1811.4At2g19830816502SNF7.2F:unknown;P:vesicle-mediated transport;C:ESCRT III complex, plasma membrane;MPFOBAO.I.H.G.S.X.
0.1811.4At4g27690828883VPS26B (VACUOLAR PROTEIN SORTING 26B)F:molecular_function unknown;P:intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi;C:retromer complex;MOFPO.I.H.G.S.X.
0.1811.4At1g15860838156-F:unknown;P:biological_process unknown;C:unknown;MFPOO.I.H.G.S.X.
0.1811.4At5g58920836009unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.2At2g18770816392signal recognition particle bindingF:signal recognition particle binding;P:biological_process unknown;C:cellular_component unknown;MOFPBAO.I.H.G.S.X.
0.1710.2At2g44680819076CKB4 (CASEIN KINASE II BETA SUBUNIT 4)Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.O.I.H.G.S.X.
0.1710.2At4g15410827210PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma)F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.H.G.S.X.
0.168.8At3g15710820814signal peptidase, putativeF:peptidase activity;P:proteolysis, signal peptide processing;C:endoplasmic reticulum, plasma membrane, membrane;MFOBAPO.I.H.G.S.X.
0.168.8At4g17640827484CKB2Encodes casein kinase II beta (regulatory) subunit.O.I.H.G.S.X.
0.168.8At2g19470816466ckl5 (Casein Kinase I-like 5)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPBFVAO.I.H.G.S.X.
0.157.8At5g65960836726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.157.8At4g31410829268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.157.8At1g80900844430magnesium transporter CorA-like family protein (MGT1) (MRS2)F:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFOMBO.I.H.G.S.X.
0.157.8At3g59920825162ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)RAB GDP DISSOCIATION INHIBITOR 2O.I.H.G.S.X.
0.146.8At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.146.8At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.135.8At1g27000839590bZIP family transcription factorF:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBMO.I.H.G.S.X.
0.135.8At1g03150839562GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MBOFAPO.I.H.G.S.X.
0.135.8At5g15400831392U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MFOPO.I.H.G.S.X.
0.135.8At2g45200819128GOS12 (GOLGI SNARE 12)Encodes a member of the GOS1 (Golgi SNARE) gene family.O.I.H.G.S.X.
0.135.8At1g62880842589cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.135.8At2g37160818292transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAO.I.H.G.S.X.
0.135.8At1g54390841881PHD finger protein-relatedING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.135.8At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.135.8At2g28390817387SAND family proteinF:unknown;P:unknown;C:chloroplast;MFOBPAVO.I.H.G.S.X.
0.124.9At1g15370838106-F:molecular_function unknown;P:transport;C:unknown;POFO.I.H.G.S.X.
0.124.9At5g52210835297ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.124.9At2g42670818867unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.114.1At2g17975816309zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOFO.I.H.G.S.X.
0.114.1At1g69980843335unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.114.1At4g39240830080kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVFO.I.H.G.S.X.
0.092.8At3g05530819718RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.O.I.H.G.S.X.
0.082.3At1g47200841123WPP2WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary for NE targeting of WPP1. RNAi suppression of WPP2 resulted in reduced mitotic activity.O.I.H.G.S.X.
0.082.3At5g24710832542-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPVAO.I.H.G.S.X.
0.082.3At1g08370837357DCP1 (decapping 1)Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.O.I.H.G.S.X.
0.061.4At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.

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