Co-expression analysis

Gene ID Contig3334_at
Gene name
Homology with ArabidopsisSimilar to At3g53610: ATRAB8 (HF=2e-53)
Module size 6 genes
NF 0.80
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.9198.10.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8092.50.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.3647.10.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.94Contig14248_atContig14248--2e+0At4g03060AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)O.I.H.G.S.X.
0.5774.90.94Contig5612_s_atContig5612--3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5572.00.91Contig19802_atContig19802--3e+0At5g59300UBC7 (UBIQUITIN CARRIER PROTEIN 7)O.I.H.G.S.X.
0.5572.00.94Contig6892_s_atContig6892--1e+0At5g19810proline-rich extensin-like family proteinO.I.H.G.S.X.
0.5369.70.93Contig5658_atContig5658--2e-1At1g23740oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.5066.90.94Contig15125_atContig15125--2e-9At5g43700ATAUX2-11 (AUXIN INDUCIBLE 2-11)O.I.H.G.S.X.
0.5066.90.94Contig7205_atContig7205--2e-2At2g32550rcd1-like cell differentiation family proteinO.I.H.G.S.X.
0.5066.90.96Contig11576_atContig11576--4e-1At3g58150-O.I.H.G.S.X.
0.5066.90.96Contig8563_atContig8563--3e-2At3g04990-O.I.H.G.S.X.
0.4762.20.90Contig13902_atContig13902--3e+0At3g25470bacterial hemolysin-relatedO.I.H.G.S.X.
0.4762.20.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.4661.00.93Contig3302_atContig3302--3e-1At2g01100unknown proteinO.I.H.G.S.X.
0.4661.00.94Contig5046_atContig5046--3e-6At3g45280SYP72 (SYNTAXIN OF PLANTS 72)O.I.H.G.S.X.
0.4458.90.91Contig631_atContig631--2e-19At5g66280GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)O.I.H.G.S.X.
0.4458.90.94Contig15074_atContig15074--4e+0At2g27160unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig4537_atContig4537--3e-36At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.4255.20.93Contig3233_atContig3233--2e+0At1g12810proline-rich family proteinO.I.H.G.S.X.
0.4255.20.93HM04D16u_s_atHM04D16u--3e+0At5g10400histone H3O.I.H.G.S.X.
0.4053.10.94Contig19698_atContig19698--6e-3At2g33030AtRLP25 (Receptor Like Protein 25)O.I.H.G.S.X.
0.4053.10.95Contig26506_atContig26506--7e-2At1g75720unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig10617_atContig10617--6e-2At5g66490unknown proteinO.I.H.G.S.X.
0.3950.50.91Contig13890_atContig13890--3e-32At3g46920protein kinase family proteinO.I.H.G.S.X.
0.3849.50.94Contig12867_atContig12867--9e-41At1g34430EMB3003 (embryo defective 3003)O.I.H.G.S.X.
0.3849.50.89Contig3353_s_atContig3353--3e-1At3g62410CP12-2O.I.H.G.S.X.
0.3849.50.95Contig18104_atContig18104--2e-2At1g63057unknown proteinO.I.H.G.S.X.
0.3647.10.94Contig2148_atContig2148--3e-124At3g29360UDP-glucose 6-dehydrogenase, putativeO.I.H.G.S.X.
0.3545.10.94Contig4672_atContig4672--4e-71At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.3545.10.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.3545.10.93Contig2053_atContig2053--5e+0At2g38880NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)O.I.H.G.S.X.
0.3342.60.92Contig6600_atContig6600--3e+0At1g02150pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3342.60.92Contig10039_atContig10039--8e-4At3g46930protein kinase family proteinO.I.H.G.S.X.
0.3342.60.93HVSMEa0008K01r2_atHVSMEa0008K01r2--3e+0At1g71470unknown proteinO.I.H.G.S.X.
0.3342.60.93S0001100150B08F1_s_atS0001100150B08F1--1e+1At5g43680unknown proteinO.I.H.G.S.X.
0.3342.60.93Contig13124_atContig13124--6e-11At3g56690CIP111 (CAM INTERACTING PROTEIN 111)O.I.H.G.S.X.
0.3342.60.93EBro08_SQ003_F16_atEBro08_SQ003_F16--6e-1At3g48800sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.3342.60.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3138.60.93Contig8828_atContig8828--7e-3At2g38450-O.I.H.G.S.X.
0.3138.60.95Contig7285_atContig7285--2e-4At5g17670hydrolase, acting on ester bondsO.I.H.G.S.X.
0.3138.60.95Contig3111_atContig3111--5e-1At5g64667IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)O.I.H.G.S.X.
0.3037.00.93Contig15033_atContig15033--2e-16At3g17850protein kinase, putativeO.I.H.G.S.X.
0.3037.00.91Contig4697_s_atContig4697--4e+0At2g31490unknown proteinO.I.H.G.S.X.
0.3037.00.92Contig7722_atContig7722--4e-5At5g44210ERF9 (ERF DOMAIN PROTEIN 9)O.I.H.G.S.X.
0.2935.50.90Contig7151_atContig7151--5e-12At4g12610transcription initiation factor IIF alpha subunit (TFIIF-alpha) family proteinO.I.H.G.S.X.
0.2935.50.93Contig16313_atContig16313--1e-1At1g35170-O.I.H.G.S.X.
0.2935.50.94Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.2935.50.95rbags1b15_x_atrbags1b15--2e-7At3g09820ADK1 (adenosine kinase 1)O.I.H.G.S.X.
0.2835.50.92Contig3684_atContig3684--2e+0At4g24370unknown proteinO.I.H.G.S.X.
0.2835.50.92Contig1393_atContig1393--1e-42At3g46520ACT12 (ACTIN-12)O.I.H.G.S.X.
0.2835.50.95Contig5749_atContig5749--6e-16At2g25310carbohydrate bindingO.I.H.G.S.X.
0.2732.10.95Contig4507_atContig4507--6e+0At1g61760harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.494.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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