Co-expression analysis

Gene ID Contig3334_at
Gene name
Homology with ArabidopsisSimilar to At3g53610: ATRAB8 (HF=2e-53)
Module size 6 genes
NF 0.80
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.9198.10.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8092.50.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.3647.10.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.494.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620541_at, orthologous to the query gene, Contig3334_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4767.71620541_atAt3g53610hypothetical protein LOC100257177-5e-75At3g53610ATRAB8O.I.H.G.S.X.
0.6384.31613101_atAt3g53610hypothetical protein LOC100253683-3e-69At3g62120tRNA synthetase class II (G, H, P and S) family proteinO.I.H.G.S.X.
0.5679.41609699_atAt3g53610hypothetical protein LOC100241045-1e-3At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.5375.21617669_atAt3g53610hypothetical protein LOC100265782-2e-34At4g35230BSK1 (BR-SIGNALING KINASE 1)O.I.H.G.S.X.
0.5072.71609567_atAt3g53610hypothetical protein LOC100241045-1e-3At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.4666.51612913_atAt3g53610similar to Citrate synthase, glyoxysomal-1e-46At3g58750CSY2 (citrate synthase 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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