Co-expression analysis

Gene ID	Contig3334_at
Gene name
Homology with Arabidopsis	Similar to At3g53610: ATRAB8 (HF=2e-53)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.91170.1.S1_x_at, orthologous to the query gene, Contig3334_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	GmaAffx.91170.1.S1_x_at	At3g53610	-	-	5e-58	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.92555.1.S1_s_at	At3g53610	-	-	2e-113	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.8031.1.S1_at	At3g53610	-	-	4e-76	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.14686.2.S1_s_at	At3g53610	-	-	5e-24	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.16051.1.S1_at	At3g53610	-	-	6e-25	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.93620.1.S1_s_at	At3g53610	-	-	3e-19	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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