Co-expression analysis

Gene ID Contig3332_at
Gene name
Homology with ArabidopsisSimilar to At3g21215: RNA-binding protein, putative (HF=2e-1)
Module size 6 genes
NF 0.82
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8394.00.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.8394.00.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.4458.90.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3706.1.S1_at, orthologous to the query gene, Contig3332_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8Zm.3706.1.S1_atAt3g21215hypothetical protein LOC100272244-2e-1At3g04080ATAPY1 (APYRASE 1)O.I.H.G.S.X.
0.4455.7Zm.17661.1.A1_atAt3g21215--1e+0At5g61410RPEO.I.H.G.S.X.
0.4251.3Zm.19044.1.S1_atAt3g21215--3e+0At5g53592-O.I.H.G.S.X.
0.4149.7Zm.4271.4.A1_atAt3g21215hypothetical protein LOC100273684-6e-5At1g02690IMPA-6 (IMPORTIN ALPHA ISOFORM 6)O.I.H.G.S.X.
0.4048.5Zm.5796.2.S1_atAt3g21215--3e-18At5g66420-O.I.H.G.S.X.
0.3641.3Zm.306.1.S1_s_atAt3g21215HMGI/Y protein /// high mobility group I/Y-2-2e+0At3g47620AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)O.I.H.G.S.X.
0.3641.3Zm.11334.1.A1_atAt3g21215autophagy-related 4b-8e-2At2g44140autophagy 4a (APG4a)O.I.H.G.S.X.
0.3641.3Zm.19350.1.A1_atAt3g21215yip1 domain family member 6-2e-18At4g30260integral membrane Yip1 family proteinO.I.H.G.S.X.
0.3336.0Zm.4406.1.A1_atAt3g21215splicing factor, arginine/serine-rich 12-2e+0At2g26695binding / zinc ion bindingO.I.H.G.S.X.
0.3233.4Zm.17543.1.A1_atAt3g21215--6e+0At5g25240-O.I.H.G.S.X.
0.3131.6Zm.7858.1.A1_atAt3g21215--3e-3At1g70940PIN3 (PIN-FORMED 3)O.I.H.G.S.X.
0.3029.8Zm.5429.1.A1_atAt3g21215BSD domain containing protein-5e+0At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.3029.8Zm.9236.1.A1_atAt3g21215--8e-2At3g01860unknown proteinO.I.H.G.S.X.
0.3029.8Zm.11327.1.S1_atAt3g21215--1e+0At5g18404unknown proteinO.I.H.G.S.X.
0.2928.1Zm.17779.1.S1_atAt3g21215--2e-1At3g51610unknown proteinO.I.H.G.S.X.
0.2724.6Zm.17516.1.S1_atAt3g21215hypothetical protein LOC100216611-3e-12At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.2419.8Zm.17660.1.S1_atAt3g21215--4e-1At4g39720VQ motif-containing proteinO.I.H.G.S.X.
0.2318.6Zm.2997.1.S1_atAt3g21215REX1 DNA Repair family protein-6e+0At5g35525unknown proteinO.I.H.G.S.X.
0.2318.6Zm.12997.1.S1_atAt3g21215--2e-21At3g46740TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)O.I.H.G.S.X.
0.2318.6Zm.18133.1.A1_atAt3g21215--8e-38At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.H.G.S.X.
0.2216.9Zm.18673.1.A1_atAt3g21215BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-2e+0At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2216.9Zm.857.1.S1_atAt3g21215--1e-1At5g50150unknown proteinO.I.H.G.S.X.
0.2014.2Zm.13527.1.S1_atAt3g21215--4e-1At2g20820unknown proteinO.I.H.G.S.X.
0.2014.2Zm.2862.2.S1_atAt3g21215Calnexin-1e-61At5g61790calnexin 1 (CNX1)O.I.H.G.S.X.
0.2014.2Zm.10219.2.S1_a_atAt3g21215hypothetical LOC542286-1e-7At1g25220ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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