Co-expression analysis

Gene ID Contig3332_at
Gene name
Homology with ArabidopsisSimilar to At3g21215: RNA-binding protein, putative (HF=2e-1)
Module size 6 genes
NF 0.82
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8394.00.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.8394.00.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.4458.90.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1606982_at, orthologous to the query gene, Contig3332_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.71606982_atAt3g21215--2e-5At3g20320TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)O.I.H.G.S.X.
0.6787.91613671_atAt3g21215hypothetical protein LOC100241076-2e-2At4g36690ATU2AF65AO.I.H.G.S.X.
0.4868.81620546_atAt3g21215similar to T5E21.11-5e-46At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.4666.51616319_atAt3g21215heterogeneous nuclear ribonucleoprotein-like-1e-38At2g44710RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4361.51614197_atAt3g21215similar to catalytic-2e-55At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.3853.61608609_atAt3g21215hypothetical protein LOC100267912-2e-76At2g17510EMB2763 (EMBRYO DEFECTIVE 2763)O.I.H.G.S.X.
0.3853.61609214_atAt3g21215hypothetical protein LOC100266203-4e-35At1g25490RCN1 (ROOTS CURL IN NPA)O.I.H.G.S.X.
0.3141.31620507_atAt3g21215hypothetical protein LOC100242836-1e-19At5g04410NAC2O.I.H.G.S.X.
0.2428.71609034_atAt3g21215hypothetical protein LOC100242187-1e+0At5g42680unknown proteinO.I.H.G.S.X.
0.2124.01619732_atAt3g21215hypothetical protein LOC100267623-5e-15At5g53000TAP46 (2A phosphatase associated protein of 46 kD)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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