Co-expression analysis

Gene ID	Contig3332_at
Gene name
Homology with Arabidopsis	Similar to At3g21215: RNA-binding protein, putative (HF=2e-1)
Module size	6 genes
NF	0.82
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27744.1.S1_x_at, orthologous to the query gene, Contig3332_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	Ta.27744.1.S1_x_at	At3g21215	-	-	4e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.	Please select
0.91	98.2	Ta.27744.2.S1_a_at	At3g21215	-	-	2e+0	At1g02813	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.2534.1.S1_at	At3g21215	-	-	1e-2	At4g28940	catalytic	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.5382.1.S1_x_at	At3g21215	-	-	1e+1	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.23034.1.A1_s_at	At3g21215	-	-	3e-1	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.1967.2.A1_x_at	At3g21215	-	-	9e-1	At5g18600	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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