Co-expression analysis

Gene ID Contig3332_at
Gene name
Homology with ArabidopsisSimilar to At3g21215: RNA-binding protein, putative (HF=2e-1)
Module size 6 genes
NF 0.82
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8394.00.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.8394.00.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.4458.90.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.218102.1.S1_at, orthologous to the query gene, Contig3332_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.2PtpAffx.218102.1.S1_atAt3g21215hypothetical protein-2e+1At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.4471.9PtpAffx.249.411.A1_a_atAt3g21215high mobility group family-7e-1At3g12510unknown proteinO.I.H.G.S.X.
0.1830.8Ptp.5444.1.S1_x_atAt3g21215hypothetical protein-6e-121At5g20010RAN-1O.I.H.G.S.X.
0.1525.3PtpAffx.27728.1.S1_atAt3g21215--5e-35At3g14270phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.
0.1423.5Ptp.5444.1.S1_atAt3g21215hypothetical protein-6e-121At5g20010RAN-1O.I.H.G.S.X.
0.0711.6PtpAffx.4277.1.S1_a_atAt3g21215--1e-131At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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