Co-expression analysis

Gene ID Contig3332_at
Gene name
Homology with ArabidopsisSimilar to At3g21215: RNA-binding protein, putative (HF=2e-1)
Module size 6 genes
NF 0.82
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.8394.00.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.8394.00.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8394.00.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6380.30.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.4458.90.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.83700.1.S1_at, orthologous to the query gene, Contig3332_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.8GmaAffx.83700.1.S1_atAt3g21215--2e-1At4g29980unknown proteinO.I.H.G.S.X.
0.4766.6GmaAffx.75952.1.S1_atAt3g21215--3e-16At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.4766.6GmaAffx.42023.1.S1_atAt3g21215--6e-34At5g19330armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.4158.1GmaAffx.53665.1.S1_s_atAt3g21215--6e-1At3g20400EMB2743 (EMBRYO DEFECTIVE 2743)O.I.H.G.S.X.
0.4057.1GmaAffx.57988.1.S1_atAt3g21215--2e-17At1g77840eukaryotic translation initiation factor 5, putative / eIF-5, putativeO.I.H.G.S.X.
0.3548.6GmaAffx.76119.1.S1_atAt3g21215--1e+0At3g59830ankyrin protein kinase, putativeO.I.H.G.S.X.
0.3142.2GmaAffx.33003.1.S1_atAt3g21215--8e-34At5g54310AGD5 (ARF-GAP domain 5)O.I.H.G.S.X.
0.3040.4GmaAffx.6954.1.S1_atAt3g21215--6e-5At5g06560unknown proteinO.I.H.G.S.X.
0.3040.4GmaAffx.92079.1.A1_s_atAt3g21215--2e-13At3g61600ATPOB1O.I.H.G.S.X.
0.2939.0Gma.11250.3.S1_a_atAt3g21215--3e-20At3g19640magnesium transporter CorA-like family protein (MRS2-3)O.I.H.G.S.X.
0.2735.7Gma.17259.1.A1_atAt3g21215VHS and GAT domain protein-3e+0At2g47950unknown proteinO.I.H.G.S.X.
0.2329.9Gma.3735.3.S1_atAt3g21215--1e-67At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.2228.1GmaAffx.56909.1.S1_atAt3g21215--1e+1At5g09978PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)O.I.H.G.S.X.
0.2126.6Gma.3735.3.S1_x_atAt3g21215--1e-67At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.1923.7Gma.4831.3.S1_atAt3g21215--2e-1At1g72880acid phosphatase survival protein SurE, putativeO.I.H.G.S.X.
0.1721.2Gma.5163.2.S1_atAt3g21215--1e-4At4g12000-O.I.H.G.S.X.
0.1518.7Gma.8400.1.S1_atAt3g21215--4e-23At1g14290SBH2 (SPHINGOID BASE HYDROXYLASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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