Co-expression analysis

Gene ID	Contig3326_s_at
Gene name
Homology with Arabidopsis	Similar to At5g01300: phosphatidylethanolamine-binding family protein (HF=8e+0)
Module size	37 genes
NF	0.23
%ile	28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.91	Contig3326_s_at	Contig3326	-	-	8e+0	At5g01300	phosphatidylethanolamine-binding family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig297_s_at	Contig297	-	-	5e-59	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig7506_at	Contig7506	-	-	2e-39	At3g23310	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	HVSMEk0006K21f_at	HVSMEk0006K21f	-	-	1e-3	At4g26870	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	HVSMEa0001A19r2_at	HVSMEa0001A19r2	-	-	1e+1	At4g24340	phosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig8240_at	Contig8240	-	-	5e+0	At4g12825	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig3940_at	Contig3940	-	-	1e+0	At5g22100	RNA cyclase family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig653_at	Contig653	-	-	5e-1	At3g29375	XH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HVSMEl0020O13r2_s_at	HVSMEl0020O13r2	-	-	9e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig14601_at	Contig14601	-	-	1e+0	At2g12905	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig11782_s_at	Contig11782	-	-	1e-2	At5g03460	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	HY08H20u_s_at	HY08H20u	-	-	8e-1	At3g55170	60S ribosomal protein L35 (RPL35C)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	HW03D07u_s_at	HW03D07u	-	-	8e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	rbaak22p05_s_at	rbaak22p05	-	-	2e-6	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig6496_at	Contig6496	-	-	7e+0	At4g02000	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig661_at	Contig661	-	-	4e-23	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	EBpi01_SQ003_C12_s_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	HK06B02r_s_at	HK06B02r	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig4091_at	Contig4091	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig11373_at	Contig11373	-	-	5e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig21610_at	Contig21610	-	-	4e+1	At5g16770	AtMYB9 (myb domain protein 9)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig8884_at	Contig8884	-	-	3e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig17291_at	Contig17291	-	-	5e-1	At5g27541	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig3108_at	Contig3108	-	-	2e+0	At2g15570	thioredoxin M-type 3, chloroplast (TRX-M3)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig428_at	Contig428	-	-	3e-71	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig9721_at	Contig9721	UDP-D-glucose epimerase 3	-	3e+0	At4g10960	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig4476_at	Contig4476	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig5398_s_at	Contig5398	-	-	7e+0	Atmg01220	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig3042_at	Contig3042	-	-	2e-12	At5g25370	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig11474_at	Contig11474	-	-	3e-6	At1g32850	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig25107_at	Contig25107	-	-	2e+0	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig5680_at	Contig5680	-	-	1e-1	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.6	92.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.4	91.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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