Co-expression analysis

Gene ID Contig3301_s_at
Gene name
Homology with ArabidopsisSimilar to At1g08660: glycosyl transferase family 29 protein / sialyltransferase family protein (HF=7e-1)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3849.50.87Contig3301_s_atContig3301--7e-1At1g08660glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.8394.00.88Contig6718_s_atContig6718--1e-8At5g40550unknown proteinO.I.H.G.S.X.
0.6784.70.86Contig11308_atContig11308--1e-13At1g49430LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)O.I.H.G.S.X.
0.6784.70.90Contig14233_atContig14233--5e-1At5g17590prothymosin alpha-relatedO.I.H.G.S.X.
0.5774.90.88Contig6866_atContig6866--1e-2At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.2630.40.88Contig2878_atContig2878--4e-1At3g496302-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.194.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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