Co-expression analysis

Gene ID	Contig3295_at
Gene name
Homology with Arabidopsis	Similar to At3g55040: GSTL2 (HF=2e-1)
Module size	6 genes
NF	0.36
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.83	Contig3295_at	Contig3295	-	-	2e-1	At3g55040	GSTL2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig16344_at	Contig16344	-	-	2e+0	At3g15410	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	HVSMEb0003M21r2_x_at	HVSMEb0003M21r2	-	-	3e-1	At2g18721	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.86	Contig20244_at	Contig20244	-	-	2e-4	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig9720_at	Contig9720	-	-	2e+0	At3g10150	PAP16 (PURPLE ACID PHOSPHATASE 16)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.87	Contig12561_at	Contig12561	-	-	1e+0	At5g53720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.9	99.8	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
23.8	99.8	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
12.4	99.4	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
5.3	97.4	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.1	96.2	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.1	96.2	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.0	96.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.7	95.5	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.6	95.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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