Co-expression analysis

Gene ID	Contig3281_s_at
Gene name
Homology with Arabidopsis	Similar to At5g57655: xylose isomerase family protein (HF=2e-45)
Module size	6 genes
NF	0.64
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.72	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.70	HV02H21u_at	HV02H21u	-	-	4e+0	At4g27900	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.72	Contig22727_at	Contig22727	-	-	2e+0	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.76	Contig20816_at	Contig20816	-	-	1e-1	At4g36780	transcription regulator	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.70	HVSMEf0018G20r2_s_at	HVSMEf0018G20r2	-	-	2e-1	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.73	HO06A21S_at	HO06A21S	-	-	1e-2	At2g44000	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
5.6	97.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.4	94.8	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
3.4	94.8	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
3.1	94.1	GSM372965	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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