Co-expression analysis

Gene ID	Contig3265_s_at
Gene name
Homology with Arabidopsis	Similar to At2g35910: zinc finger (C3HC4-type RING finger) family protein (HF=3e-2)
Module size	11 genes
NF	0.79
%ile	96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.96	Contig5242_at	Contig5242	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig5342_at	Contig5342	-	-	4e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.97	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.96	HA28J12r_s_at	HA28J12r	-	-	1e+0	At3g23255	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	Contig3856_at	Contig3856	-	-	1e-19	At1g52600	signal peptidase, putative	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	Contig2826_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.96	Contig8436_s_at	Contig8436	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.96	HV05M01u_x_at	HV05M01u	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.97	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig4494_s_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.1	98.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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