Co-expression analysis

Gene ID	Contig324_at
Gene name
Homology with Arabidopsis	Similar to At3g11510: 40S ribosomal protein S14 (RPS14B) (HF=1e-74)
Module size	25 genes
NF	0.48
%ile	66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.4	0.95	Contig324_at	Contig324	-	-	1e-74	At3g11510	40S ribosomal protein S14 (RPS14B)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	EBpi03_SQ003_A03_s_at	EBpi03_SQ003_A03	-	-	6e-4	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig19387_at	Contig19387	-	-	2e-1	At3g30580	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.97	Contig10380_x_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig25214_at	Contig25214	-	-	1e+0	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig6681_at	Contig6681	-	-	4e+0	At5g63460	SAP domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.98	Contig11081_at	Contig11081	-	-	1e-26	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig15613_at	Contig15613	-	-	7e-16	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig3541_s_at	Contig3541	-	-	2e-5	At2g36390	SBE2.1 (starch branching enzyme 2.1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	HS17I13u_s_at	HS17I13u	-	-	7e-1	At1g42480	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig2584_at	Contig2584	-	-	1e-6	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig6921_s_at	Contig6921	-	-	7e-22	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	rbasd18a22_s_at	rbasd18a22	-	-	3e-3	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.97	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig6217_at	Contig6217	-	-	5e-86	At5g19820	emb2734 (embryo defective 2734)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.97	Contig15982_at	Contig15982	-	-	3e-4	At3g19290	ABF4 (ABRE BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig5972_at	Contig5972	-	-	1e-24	At1g80460	NHO1 (nonhost resistance to P. s. phaseolicola 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.97	Contig26100_at	Contig26100	-	-	2e+0	At1g53460	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.97	Contig1913_s_at	Contig1913	-	-	2e-46	At3g09200	60S acidic ribosomal protein P0 (RPP0B)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig19458_at	Contig19458	-	-	2e+0	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.2	90.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.1	89.7	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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