Co-expression analysis

Gene ID	Contig3217_s_at
Gene name
Homology with Arabidopsis	Similar to At4g08230: glycine-rich protein (HF=2e-2)
Module size	7 genes
NF	0.54
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.85	Contig3217_s_at	Contig3217	-	-	2e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig321_at	Contig321	-	-	2e-27	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig19227_at	Contig19227	-	-	1e+0	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.89	HA01A13u_at	HA01A13u	-	-	3e+0	At2g42220	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig13949_at	Contig13949	-	-	1e+0	At3g45990	actin-depolymerizing factor, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.88	HA26O15r_at	HA26O15r	-	-	1e-2	At3g14225	GLIP4	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.88	Contig3375_at	Contig3375	-	-	1e-12	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
14.5	99.5	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.6	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.5	98.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.7	98.3	GSM71149	OWB-R unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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