Co-expression analysis

Gene ID	Contig319_at
Gene name
Homology with Arabidopsis	Similar to At5g02500: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) (HF=2e-48)
Module size	10 genes
NF	0.32
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.82	Contig319_at	Contig319	-	-	2e-48	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.81	Contig3199_at	Contig3199	-	-	7e+0	At4g17850	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.80	Contig3198_x_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig6949_at	Contig6949	-	-	2e+0	At2g25230	MYB100 (myb domain protein 100)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.85	rbaal31j11_s_at	rbaal31j11	-	-	1e+0	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig9301_at	Contig9301	-	-	3e-2	At1g14860	atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.87	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig8396_at	Contig8396	-	-	6e+0	At3g20910	NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.85	Contig406_at	Contig406	-	-	2e+0	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.85	Contig3498_at	Contig3498	-	-	7e-59	At5g06360	ribosomal protein S8e family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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