Co-expression analysis

Gene ID	Contig3187_s_at
Gene name
Homology with Arabidopsis	Similar to At1g31410: putrescine-binding periplasmic protein-related (HF=1e+0)
Module size	12 genes
NF	0.26
%ile	32.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.85	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.88	Contig2347_at	Contig2347	-	-	3e-4	At3g18070	BGLU43 (BETA GLUCOSIDASE 43)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.92	Contig17684_at	Contig17684	-	-	1e-1	At4g16610	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.91	Contig11990_at	Contig11990	-	-	2e+0	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.89	HK04G05r_at	HK04G05r	-	-	7e-1	At2g40935	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.89	rbags12k11_s_at	rbags12k11	-	-	1e-6	At3g25540	LAG1	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.88	Contig3757_at	Contig3757	-	-	1e-30	At3g12860	nucleolar protein Nop56, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.88	Contig20300_at	Contig20300	-	-	6e+0	At4g17486	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig7528_s_at	Contig7528	-	-	1e-2	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.86	Contig16430_at	Contig16430	-	-	2e-4	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.88	Contig13773_at	Contig13773	-	-	5e+0	At5g24352	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.85	Contig2867_at	Contig2867	-	-	8e-14	At5g01320	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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