CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig3173_at

Gene name
Homology with Arabidopsis Similar to At4g05091: unknown protein (HF=6e+0)

Module size 6 genes

NF 0.45

%ile 62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 56.4 0.93 Contig3173_at Contig3173 - - 6e+0 At4g05091 unknown protein O.I. H.G. S.X.
0.63 80.3 0.93 Contig3802_at Contig3802 - - 3e-76 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.55 72.0 0.94 Contig396_at Contig396 - - 3e-57 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.
0.46 61.0 0.93 Contig14946_at Contig14946 - - 2e-1 At2g46340 SPA1 (SUPPRESSOR OF PHYA-105 1) O.I. H.G. S.X.
0.35 45.1 0.93 HV12C23u_x_at HV12C23u - - 5e+0 At5g35475 - O.I. H.G. S.X.
0.30 37.0 0.92 Contig3801_at Contig3801 - - 4e-26 At1g69840 band 7 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.9 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1 94.1 GSM372953 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1 94.1 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1 94.1 GSM372972 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1 94.1 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0 93.8 GSM372991 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0 93.8 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0 93.8 GSM372995 genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1610323_at, orthologous to the query gene, Contig3173_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 1610323_at At4g05091 hypothetical protein LOC100259666 - 1e+0 At4g18335 unknown protein O.I. H.G. S.X.
0.50 72.7 1619981_at At4g05091 similar to MtN19-like protein - 8e-7 At5g61820 - O.I. H.G. S.X.
0.30 39.4 1621336_at At4g05091 hypothetical protein LOC100254009 - 1e-84 At4g08390 SAPX (STROMAL ASCORBATE PEROXIDASE) O.I. H.G. S.X.
0.25 30.5 1615805_at At4g05091 - - 1e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.07 7.8 1616901_at At4g05091 hypothetical protein LOC100261124 - 2e-50 At5g14040 mitochondrial phosphate transporter O.I. H.G. S.X.
0.05 6.0 1613292_s_at At4g05091 similar to putative protein - 3e+0 At2g27410 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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