Co-expression analysis

Gene ID	Contig316_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59970: histone H4 (HF=2e-24)
Module size	29 genes
NF	0.77
%ile	95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.88	Contig316_s_at	Contig316	-	-	2e-24	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.90	Contig7671_at	Contig7671	-	-	4e-34	At2g27200	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.91	Contig20758_at	Contig20758	-	-	2e+0	At1g26796	-	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.91	HK05G18r_at	HK05G18r	-	-	7e+0	At4g01023	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.90	Mla13_div5_x_at	Mla13_div5	-	-	2e-1	At5g22660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.92	HVSMEa0011L19r2_x_at	HVSMEa0011L19r2	-	-	5e-2	At3g50210	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.89	Contig7669_s_at	Contig7669	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	HU13H10u_at	HU13H10u	-	-	4e+0	At5g19530	ACL5 (ACAULIS 5)	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.91	HF16B18r_at	HF16B18r	-	-	4e+0	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.91	HW02P01u_s_at	HW02P01u	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.93	HD04N07u_at	HD04N07u	-	-	4e+0	At5g52940	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.88	Contig24593_at	Contig24593	-	-	5e+0	At5g18780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.90	Mla12DH_orf_3pri12_s_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.90	HVSMEc0003N15r2_s_at	HVSMEc0003N15r2	-	-	1e-2	At1g50250	FTSH1 (FtsH protease 1)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.90	Contig23903_at	Contig23903	-	-	1e+0	At2g30766	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.88	Contig22987_at	Contig22987	-	-	1e+0	At5g44860	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.91	HV_CEa0004L12f_at	HV_CEa0004L12f	-	-	1e+1	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.90	Contig1248_s_at	Contig1248	-	-	3e-8	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	EBem10_SQ004_P21_x_at	EBem10_SQ004_P21	-	-	5e-3	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig1324_at	Contig1324	-	-	4e-1	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.89	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.90	Contig25606_at	Contig25606	-	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.90	Contig21455_at	Contig21455	-	-	1e-11	At3g10090	40S ribosomal protein S28 (RPS28A)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.90	HVSMEb0014B13r2_at	HVSMEb0014B13r2	-	-	5e+0	At2g35208	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig17526_at	Contig17526	-	-	4e+0	At4g33020	ZIP9	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.87	HW02P01u_at	HW02P01u	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.87	Contig23720_at	Contig23720	-	-	5e-1	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.89	HVSMEn0013N19f_s_at	HVSMEn0013N19f	-	-	1e+0	At4g36100	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig6744_at	Contig6744	-	-	1e-8	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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