Co-expression analysis

Gene ID	Contig3147_at
Gene name
Homology with Arabidopsis	Similar to At1g09940: HEMA2 (HF=3e-4)
Module size	6 genes
NF	0.82
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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