Co-expression analysis

Gene ID Contig30_s_at
Gene name
Homology with ArabidopsisSimilar to At5g59690: histone H4 (HF=4e-19)
Module size 6 genes
NF 0.58
%ile 79.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig30_s_atContig30--4e-19At5g59690histone H4O.I.H.G.S.X.
0.7790.80.97Contig4072_atContig4072--2e+0At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.5674.30.96HD13H12r_s_atHD13H12r--2e-1At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.5572.00.97Contig3558_s_atContig3558--2e-15At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.4255.20.96Contig3659_atContig3659--3e-7At4g29060emb2726 (embryo defective 2726)O.I.H.G.S.X.
0.2326.10.97Contig3806_s_atContig3806--1e-3At2g43710SSI2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM130803JA, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.695.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.10329.8.S1_x_at, orthologous to the query gene, Contig30_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.10329.8.S1_x_atAt5g59690--3e-20At5g59690histone H4O.I.H.G.S.X.
0.9398.7Ta.7378.5.A1_atAt5g59690--1e-3At3g09480histone H2B, putativeO.I.H.G.S.X.
0.9398.7Ta.28691.1.A1_x_atAt5g59690--4e+0At5g59970histone H4O.I.H.G.S.X.
0.9198.2Ta.7378.8.S1_atAt5g59690--1e-16At1g07790HTB1O.I.H.G.S.X.
0.8994.6Ta.7378.30.S1_x_atAt5g59690Protein H2B-6-3e-20At1g07790HTB1O.I.H.G.S.X.
0.8794.2Ta.27657.7.S1_x_atAt5g59690Protein H2A-1e-7At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.8593.8Ta.27101.3.S1_atAt5g59690--4e-38At1g09200histone H3O.I.H.G.S.X.
0.8593.8Ta.10329.32.S1_atAt5g59690--2e-18At5g59970histone H4O.I.H.G.S.X.
0.8493.6Ta.27101.3.S1_x_atAt5g59690--4e-38At1g09200histone H3O.I.H.G.S.X.
0.8393.4Ta.27101.2.S1_atAt5g59690--5e-19At4g40040histone H3.2O.I.H.G.S.X.
0.8292.7Ta.27657.11.S1_x_atAt5g59690--7e-12At1g08880H2AXAO.I.H.G.S.X.
0.8192.4Ta.7378.3.S1_atAt5g59690Protein H2B-6-7e-18At5g22880HTB2O.I.H.G.S.X.
0.7589.8Ta.28486.1.A1_atAt5g59690--2e-5At1g08880H2AXAO.I.H.G.S.X.
0.7589.8Ta.7378.16.S1_x_atAt5g59690Protein H2B-6-1e-23At1g07790HTB1O.I.H.G.S.X.
0.7489.4Ta.10329.15.S1_atAt5g59690--2e-21At5g59690histone H4O.I.H.G.S.X.
0.7389.1Ta.27657.1.S1_atAt5g59690protein H2A-4e-13At1g08880H2AXAO.I.H.G.S.X.
0.7188.0Ta.7378.22.S1_x_atAt5g59690Protein H2B-6 /// Protein H2B-8 /// Histone H2B-9e-21At1g07790HTB1O.I.H.G.S.X.
0.7087.2Ta.10329.13.S1_a_atAt5g59690--7e-24At5g59690histone H4O.I.H.G.S.X.
0.7087.2Ta.27657.6.S1_x_atAt5g59690Protein H2A-1e-10At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.6986.9Ta.7378.35.S1_x_atAt5g59690--2e-18At1g07790HTB1O.I.H.G.S.X.
0.6886.5Ta.27657.4.S1_x_atAt5g59690--3e-9At1g08880H2AXAO.I.H.G.S.X.
0.6886.5Ta.7378.8.S1_x_atAt5g59690Protein H2B-8-1e-16At1g07790HTB1O.I.H.G.S.X.
0.6886.5Ta.7378.28.S1_x_atAt5g59690Protein H2B-8-3e-14At1g07790HTB1O.I.H.G.S.X.
0.6786.3Ta.27657.14.S1_s_atAt5g59690Protein H2A-7e-9At1g08880H2AXAO.I.H.G.S.X.
0.6786.3Ta.7378.22.S1_atAt5g59690Protein H2B-6 /// Protein H2B-8 /// Histone H2B-9e-21At1g07790HTB1O.I.H.G.S.X.
0.6786.3Ta.10329.29.S1_x_atAt5g59690--1e-19At5g59690histone H4O.I.H.G.S.X.
0.6182.0Ta.7378.34.S1_atAt5g59690--5e-13At1g07790HTB1O.I.H.G.S.X.
0.6081.0Ta.3122.1.S1_a_atAt5g59690--6e-1At3g01570glycine-rich protein / oleosinO.I.H.G.S.X.
0.5979.8Ta.7378.25.S1_atAt5g59690Protein H2B-8-1e-22At1g07790HTB1O.I.H.G.S.X.
0.5979.8Ta.27192.1.S1_atAt5g59690protein H2A-3e-9At1g08880H2AXAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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