Co-expression analysis

Gene ID	Contig30_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=4e-19)
Module size	6 genes
NF	0.58
%ile	79.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig3659_at	Contig3659	-	-	3e-7	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.6	95.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.104205.1.A1_at, orthologous to the query gene, Contig30_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	PtpAffx.104205.1.A1_at	At5g59690	-	-	1e-25	At5g59690	histone H4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.75907.1.A1_at	At5g59690	heavy metal ATPase	-	6e-12	At5g44790	RAN1 (RESPONSIVE-TO-ANTAGONIST 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.993.1.S1_at	At5g59690	hypothetical protein	-	9e-101	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.58520.1.S1_at	At5g59690	hypothetical protein	-	1e-18	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.249.163.A1_at	At5g59690	-	-	2e+0	At1g16510	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.127990.1.A1_at	At5g59690	-	-	2e-2	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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