Co-expression analysis

Gene ID Contig3074_at
Gene name
Homology with ArabidopsisSimilar to At3g52090: NRPB11 (HF=6e+0)
Module size 17 genes
NF 0.48
%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.80.91Contig3074_atContig3074--6e+0At3g52090NRPB11O.I.H.G.S.X.
0.6581.40.93HK04G23r_s_atHK04G23r--1e+1At5g57280methyltransferaseO.I.H.G.S.X.
0.5874.90.94HK05B20r_s_atHK05B20r--1e+0At1g27000bZIP family transcription factorO.I.H.G.S.X.
0.5774.90.91Contig3070_s_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.5674.30.94Contig15199_atContig15199--4e+0At2g40150-O.I.H.G.S.X.
0.5066.90.93Contig4561_atContig4561--2e-69At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.4559.30.93Contig23245_atContig23245--5e-4At5g60550GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)O.I.H.G.S.X.
0.4559.30.94Contig25106_atContig25106--4e+0At5g64990AtRABH1a (Arabidopsis Rab GTPase homolog H1a)O.I.H.G.S.X.
0.4458.90.92Contig3070_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.4458.90.93Contig4560_x_atContig4560--2e-1At1g29000heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4255.20.94Contig18410_s_atContig18410--3e+0At4g09649unknown proteinO.I.H.G.S.X.
0.4255.20.94Contig25138_atContig25138--3e+0At1g19740ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.3950.50.95Contig19727_atContig19727--1e+0At5g51790basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3647.10.92HB26D17r_x_atHB26D17r--3e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3443.60.94Contig306_s_atContig306--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.
0.3240.30.94Contig23295_atContig23295--5e+0At3g10720pectinesterase, putativeO.I.H.G.S.X.
0.2427.20.93Contig20698_atContig20698--1e+0At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM71151Barke stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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