Co-expression analysis

Gene ID Contig3070_s_at
Gene name
Homology with ArabidopsisSimilar to At5g13260: unknown protein (HF=8e+0)
Module size 6 genes
NF 0.52
%ile 72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3647.10.93Contig3070_s_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.6077.30.95Contig4560_x_atContig4560--2e-1At1g29000heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5572.00.94Contig3871_atContig3871--3e-41At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.
0.5572.00.95Contig4561_atContig4561--2e-69At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.4762.20.94HK05B20r_s_atHK05B20r--1e+0At1g27000bZIP family transcription factorO.I.H.G.S.X.
0.4053.10.93HK04G23r_s_atHK04G23r--1e+1At5g57280methyltransferaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.396.4GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM71148OWB-R unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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