Co-expression analysis

Gene ID Contig3070_at
Gene name
Homology with ArabidopsisSimilar to At5g13260: unknown protein (HF=8e+0)
Module size 22 genes
NF 0.32
%ile 41.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7991.40.91Contig3070_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.6380.30.94Contig306_s_atContig306--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.
0.5674.30.93Contig20698_atContig20698--1e+0At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4863.20.94Contig25106_atContig25106--4e+0At5g64990AtRABH1a (Arabidopsis Rab GTPase homolog H1a)O.I.H.G.S.X.
0.4762.20.94Contig25138_atContig25138--3e+0At1g19740ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.4762.20.94Contig22623_atContig22623--5e-3At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4559.30.95Contig19129_atContig19129--2e+0At1g62250unknown proteinO.I.H.G.S.X.
0.4153.90.94Contig15741_atContig15741--4e-1At5g46300unknown proteinO.I.H.G.S.X.
0.3950.50.93Contig19021_atContig19021--9e-8At1g78650POLD3O.I.H.G.S.X.
0.3849.50.94Contig18240_atContig18240--1e+0At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.3545.10.94Contig13116_s_atContig13116--4e-11At5g23510unknown proteinO.I.H.G.S.X.
0.3443.60.94Contig23295_atContig23295--5e+0At3g10720pectinesterase, putativeO.I.H.G.S.X.
0.3240.30.95Contig20268_atContig20268--4e-1At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.
0.3037.00.94Contig3065_x_atContig3065--1e+1At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.2935.50.94Contig2523_atContig2523--4e-93At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.2935.50.94HY02L18u_atHY02L18u--4e+0At5g14920gibberellin-regulated family proteinO.I.H.G.S.X.
0.2835.50.93HVSMEf0008B22r2_atHVSMEf0008B22r2--4e+0At1g17090unknown proteinO.I.H.G.S.X.
0.2732.10.93HU08L13u_atHU08L13u--5e+0At5g61280remorin family proteinO.I.H.G.S.X.
0.2630.40.95Contig24980_atContig24980--3e-1At1g31370-O.I.H.G.S.X.
0.2122.60.94Contig17672_atContig17672--2e-16At5g23300PYRD (pyrimidine d)O.I.H.G.S.X.
0.1311.60.94HT09B14u_s_atHT09B14u--3e+0At3g55580regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.108.40.93Contig15430_atContig15430--1e-14At3g085902,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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