Co-expression analysis

Gene ID Contig3054_at
Gene name
Homology with ArabidopsisSimilar to At4g28050: TET7 (TETRASPANIN7) (HF=3e-5)
Module size 6 genes
NF 0.71
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.90Contig3054_atContig3054--3e-5At4g28050TET7 (TETRASPANIN7)O.I.H.G.S.X.
0.9198.10.90HV_CEb0010F15r2_atHV_CEb0010F15r2--5e-6At2g45500ATP binding / nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.7388.70.90Contig22222_atContig22222--1e+0At5g64160unknown proteinO.I.H.G.S.X.
0.5066.90.90HVSMEc0001K23f2_s_atHVSMEc0001K23f2--4e+0At5g24190-O.I.H.G.S.X.
0.4661.00.90HM10J16r_atHM10J16r--4e+0At5g64400-O.I.H.G.S.X.
0.4356.40.90Contig9685_atContig9685--2e-3At1g14990unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.299.7GSM71154Morex stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
12.499.4GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
9.899.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.699.0GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.098.7GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.898.6GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
7.798.6GSM161220cold treatment rep2GSE6993Barley low temperature stressLink to GEO
6.798.3GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.598.2GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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