Co-expression analysis

Gene ID Contig3050_at
Gene name
Homology with ArabidopsisSimilar to At2g47710: universal stress protein (USP) family protein (HF=2e-3)
Module size 6 genes
NF 0.29
%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.92Contig3050_atContig3050--2e-3At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.7388.70.90HVSMEk0010K24f_s_atHVSMEk0010K24f--3e-3At5g41430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6784.70.90Contig4189_atContig4189--2e-15At4g31300PBA1O.I.H.G.S.X.
0.5572.00.90Contig14490_atContig14490--1e+0At5g17810WOX12 (WUSCHEL related homeobox 12)O.I.H.G.S.X.
0.4053.10.92Contig6730_atContig6730--1e+0At3g10815zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.054.10.92HM08O22r_s_atHM08O22r--2e+0At2g20560DNAJ heat shock family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.198.4GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.997.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.797.7GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.296.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.494.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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