Co-expression analysis

Gene ID	Contig3050_at
Gene name
Homology with Arabidopsis	Similar to At2g47710: universal stress protein (USP) family protein (HF=2e-3)
Module size	6 genes
NF	0.29
%ile	37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.92	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	HVSMEk0010K24f_s_at	HVSMEk0010K24f	-	-	3e-3	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig4189_at	Contig4189	-	-	2e-15	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.90	Contig14490_at	Contig14490	-	-	1e+0	At5g17810	WOX12 (WUSCHEL related homeobox 12)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig6730_at	Contig6730	-	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.92	HM08O22r_s_at	HM08O22r	-	-	2e+0	At2g20560	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.1	98.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.9	97.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.4	94.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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