Co-expression analysis

Gene ID	Contig3033_at
Gene name
Homology with Arabidopsis	Similar to At1g47500: ATRBP47C' (RNA-binding protein 47C') (HF=9e-4)
Module size	25 genes
NF	0.27
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	85.1	0.86	Contig3033_at	Contig3033	-	-	9e-4	At1g47500	ATRBP47C' (RNA-binding protein 47C')	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.91	Contig15042_at	Contig15042	-	-	7e-3	At2g27760	ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	HA10M05u_s_at	HA10M05u	-	-	2e-1	At4g04680	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.90	Contig10457_at	Contig10457	-	-	2e-5	At1g30000	glycoside hydrolase family 47 protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	HVSMEh0088J12r2_at	HVSMEh0088J12r2	-	-	9e+0	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig733_at	Contig733	-	-	8e-19	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	HVSMEk0018E17r2_at	HVSMEk0018E17r2	-	-	7e-1	At4g13965	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig9923_at	Contig9923	-	-	4e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.90	Contig2503_at	Contig2503	-	-	9e-25	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig15063_s_at	Contig15063	-	-	2e+0	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig8090_at	Contig8090	-	-	4e-9	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.87	Contig6815_at	Contig6815	-	-	6e-11	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.90	Contig11178_at	Contig11178	-	-	1e-8	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	HK04P18r_s_at	HK04P18r	CesA6 protein	-	2e+1	Atcg00130	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.91	Contig6640_at	Contig6640	-	-	8e-10	At3g23070	RNA binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.89	Contig24566_at	Contig24566	-	-	1e+0	At5g06790	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.91	Contig16506_at	Contig16506	-	-	1e-13	At3g27020	YSL6 (YELLOW STRIPE LIKE 6)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.89	Contig11246_at	Contig11246	-	-	4e-8	At4g25800	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.87	Contig21563_at	Contig21563	-	-	6e+0	At5g28390	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig3112_at	Contig3112	-	-	5e-1	At3g50830	COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.91	Contig25721_at	Contig25721	-	-	2e+0	At1g67360	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig8484_at	Contig8484	-	-	1e-24	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.91	Contig1317_s_at	Contig1317	-	-	1e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	94.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.1	89.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.1	89.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1	89.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.0	89.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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