CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig3018_at

Gene name
Homology with Arabidopsis Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.73 88.7 0.97 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.67 84.7 0.98 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.60 77.3 0.98 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.56 74.3 0.96 Contig3992_at Contig3992 - - 1e-40 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.53 69.7 0.97 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.98	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.
0.73	88.7	0.97	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.
0.60	77.3	0.98	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.
0.56	74.3	0.96	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.
0.53	69.7	0.97	Contig18164_at	Contig18164	-	-	1e-11	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	98.4	0.97	Contig5182_at	Contig5182	-	-	9e-34	At4g12590	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.95	Contig5232_at	Contig5232	-	-	2e-30	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.
0.60	77.3	0.97	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig5301_at	Contig5301	-	-	1e-43	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig25403_at	Contig25403	-	-	4e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	O.I.	H.G.	S.X.
0.56	74.3	0.94	Contig6904_at	Contig6904	-	-	3e-41	At3g11670	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig5662_at	Contig5662	-	-	3e-1	At1g49975	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.95	Contig7933_at	Contig7933	-	-	5e-1	At5g48540	33 kDa secretory protein-related	O.I.	H.G.	S.X.
0.48	63.2	0.92	S0001000056K18F1_x_at	S0001000056K18F1	-	-	7e-1	At1g77440	PBC2	O.I.	H.G.	S.X.
0.46	61.0	0.96	HVSMEm0022B10r2_at	HVSMEm0022B10r2	-	-	8e+0	At3g05193	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.98	Contig22208_at	Contig22208	-	-	2e+0	At1g02330	-	O.I.	H.G.	S.X.
0.43	56.4	0.95	Contig5241_at	Contig5241	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.
0.42	55.2	0.93	S0001100050A08F1_x_at	S0001100050A08F1	-	-	6e-1	At1g77440	PBC2	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig3903_x_at	Contig3903	hypothetical protein LOC732694	-	3e+0	At1g65150	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.40	53.1	0.97	Contig9121_at	Contig9121	-	-	3e-6	At3g01550	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	O.I.	H.G.	S.X.
0.39	50.5	0.93	HA22G05r_x_at	HA22G05r	-	-	9e+0	At5g26692	-	O.I.	H.G.	S.X.
0.38	49.5	0.93	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.38	49.5	0.91	HB14C23r_s_at	HB14C23r	-	-	7e-1	At2g47880	glutaredoxin family protein	O.I.	H.G.	S.X.
0.38	49.5	0.94	HA22G05r_at	HA22G05r	-	-	9e+0	At5g26692	-	O.I.	H.G.	S.X.
0.36	47.1	0.80	S0001100181F11F1_at	S0001100181F11F1	-	-	1e+1	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig5460_s_at	Contig5460	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.35	45.1	0.89	HVSMEl0002P16r2_at	HVSMEl0002P16r2	-	-	6e+0	At2g09838	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.90	Contig5852_at	Contig5852	-	-	7e-7	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.
0.34	43.6	0.90	Contig12782_at	Contig12782	-	-	4e-5	At5g20550	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig16646_at	Contig16646	-	-	6e-17	At2g24990	RIO1 family protein	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig22402_at	Contig22402	potassium transporter HAK4	-	2e-8	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.
0.32	40.3	0.86	Contig5403_at	Contig5403	-	-	1e-51	At1g30510	ATRFNR2 (ROOT FNR 2)	O.I.	H.G.	S.X.
0.32	40.3	0.95	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig3625_at	Contig3625	-	-	8e-32	At3g02630	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.
0.30	37.0	0.78	Contig25475_at	Contig25475	-	-	5e+0	At1g20520	unknown protein	O.I.	H.G.	S.X.
0.30	37.0	0.86	HB20B24r_s_at	HB20B24r	-	-	8e+0	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.
0.30	37.0	0.93	HF19N13r_s_at	HF19N13r	-	-	3e+0	At1g24147	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.85	Contig7851_s_at	Contig7851	-	-	3e-1	At2g28720	histone H2B, putative	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.
0.28	35.5	0.85	Contig24103_at	Contig24103	-	-	9e-2	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	O.I.	H.G.	S.X.
0.28	35.5	0.87	HY09M19u_s_at	HY09M19u	-	-	1e-1	At3g29785	unknown protein	O.I.	H.G.	S.X.
0.28	35.5	0.88	Contig3905_at	Contig3905	-	-	1e-1	At4g01150	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	0.93	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.
0.26	30.4	0.93	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.
0.25	28.9	0.83	Contig5324_s_at	Contig5324	-	-	2e-11	At5g42390	metalloendopeptidase	O.I.	H.G.	S.X.
0.25	28.9	0.93	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.
0.25	28.9	0.95	HVSMEm0017H04r2_at	HVSMEm0017H04r2	-	-	6e-2	At1g74270	60S ribosomal protein L35a (RPL35aC)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2 97.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0 97.2 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.7 96.9 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.5 95.1 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
3.3 94.6 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.1 94.1 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.1 94.1 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
2.9 93.4 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.7	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.5	95.1	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
3.3	94.6	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.1	94.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.9	93.4	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig3018_at
Gene name
Homology with Arabidopsis	Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	91.6

Co-expression analysis

Gene ID Contig3018_at Gene name Homology with ArabidopsisSimilar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0) Module size 6 genes NF 0.71 %ile 91.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig3018_at

Gene name
Homology with Arabidopsis Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays