Co-expression analysis

Gene ID Contig3018_at
Gene name
Homology with ArabidopsisSimilar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0)
Module size 6 genes
NF 0.71
%ile 91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.7388.70.97Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.6784.70.98Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.6077.30.98Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.5674.30.96Contig3992_atContig3992--1e-40At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.5369.70.97Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM71139OWB-D stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.796.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM71152Barke stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.595.1GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO
3.394.6GSM71141OWB-D stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.194.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
2.993.4GSM71142OWB-R stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22673.1.S1_s_at, orthologous to the query gene, Contig3018_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.22673.1.S1_s_atAt4g14630germin protein precursor-1e-4At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.8092.2Ta.28782.1.S1_x_atAt4g14630pSBGer2 protein-2e+0At3g52900unknown proteinO.I.H.G.S.X.
0.8092.2Ta.24690.2.S1_atAt4g14630--8e-2At3g52900unknown proteinO.I.H.G.S.X.
0.7188.0TaAffx.110281.1.S1_s_atAt4g14630--1e+0At4g21215unknown proteinO.I.H.G.S.X.
0.5576.8Ta.27477.1.S1_x_atAt4g14630--4e+0At2g20070-O.I.H.G.S.X.
0.5576.8Ta.27477.1.S1_atAt4g14630--4e+0At2g20070-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage