CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig3018_at

Gene name
Homology with Arabidopsis Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.73 88.7 0.97 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.67 84.7 0.98 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.60 77.3 0.98 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.56 74.3 0.96 Contig3992_at Contig3992 - - 1e-40 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.53 69.7 0.97 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2 97.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0 97.2 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.7 96.9 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.5 95.1 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
3.3 94.6 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.1 94.1 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.1 94.1 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
2.9 93.4 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

A co-expression module including the rice gene, Os03g0693700, orthologous to the query gene, Contig3018_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os03g0693700 At4g14630 - Oxalate oxidase 1 (EC 1.2.3.4) (Germin) 8e+0 At3g10080 germin-like protein, putative O.I. H.G. S.X.
0.83 95.8 Os12g0151000 At4g14630 - Purple acid phosphatase 2e-1 At3g46120 PAP19 (PURPLE ACID PHOSPHATASE 19) O.I. H.G. S.X.
0.80 94.6 Os05g0247800 At4g14630 - Glycoside hydrolase, family 18 protein 2e+0 At1g64628 CPuORF57 (Conserved peptide upstream open reading frame 57) O.I. H.G. S.X.
0.73 91.1 Os06g0110200 At4g14630 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At4g11250 AGL52 O.I. H.G. S.X.
0.73 91.1 Os08g0104400 At4g14630 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein O.I. H.G. S.X.
0.50 68.0 Os07g0213600 At4g14630 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-1 At5g61660 glycine-rich protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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