Co-expression analysis

Gene ID Contig2990_at
Gene name
Homology with ArabidopsisSimilar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=1e-4)
Module size 6 genes
NF 0.67
%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig2990_atContig2990--1e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.6784.70.97HD13H12r_s_atHD13H12r--2e-1At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.6178.70.97rbah59f07_s_atrbah59f07--4e+0At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.
0.5066.90.97Contig3558_s_atContig3558--2e-15At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.4661.00.97Contig30_s_atContig30--4e-19At5g59690histone H4O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.2GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.895.7GSM130803JA, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.294.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.194.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.093.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
2.993.4GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.993.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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