Co-expression analysis

Gene ID Contig2946_at
Gene name
Homology with ArabidopsisSimilar to At5g03630: ATMDAR2 (HF=5e-5)
Module size 6 genes
NF 0.61
%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig2946_atContig2946--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.8092.50.97Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.6784.70.96Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.5066.90.97Contig3963_s_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.4863.20.96Contig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.3240.30.97Contig5777_atContig5777--3e-11At5g47570unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.50.95Contig4662_atContig4662--1e-16At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.8092.50.96Contig3856_atContig3856--1e-19At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.6178.70.94Contig4280_s_atContig4280--1e-2At5g45410unknown proteinO.I.H.G.S.X.
0.6077.30.95Contig976_atContig976--2e-26At3g52930fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.6077.30.97Contig4494_s_atContig4494--5e+0At5g55508unknown proteinO.I.H.G.S.X.
0.5674.30.96HV05M01u_x_atHV05M01u--8e+0At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.5369.70.95Contig12794_atContig12794--4e-3At3g22240unknown proteinO.I.H.G.S.X.
0.5066.90.90Contig17882_atContig17882--4e+0Atmg00910-O.I.H.G.S.X.
0.5066.90.93Contig9958_atContig9958--2e-10At2g39670radical SAM domain-containing proteinO.I.H.G.S.X.
0.5066.90.95Contig9278_atContig9278--3e+0At4g19410pectinacetylesterase, putativeO.I.H.G.S.X.
0.5066.90.97Contig8436_s_atContig8436--7e-2At5g40950RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)O.I.H.G.S.X.
0.4458.90.90Contig12090_atContig12090--2e-7At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.4458.90.93Contig9665_atContig9665--6e+0At4g12700unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig14143_s_atContig14143--2e-2At3g19900unknown proteinO.I.H.G.S.X.
0.4356.40.93Contig9277_s_atContig9277--2e-1At2g28840ankyrin repeat family proteinO.I.H.G.S.X.
0.4356.40.96HA28J12r_s_atHA28J12r--1e+0At3g23255unknown proteinO.I.H.G.S.X.
0.4255.20.95Contig5242_atContig5242--3e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.4255.20.96Contig3265_s_atContig3265--3e-2At2g35910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4153.90.95Contig6506_s_atContig6506--6e-23At5g27740EMB2775 (EMBRYO DEFECTIVE 2775)O.I.H.G.S.X.
0.4053.10.94Contig2771_atContig2771--2e+0At1g65210-O.I.H.G.S.X.
0.4053.10.95Contig15548_atContig15548--2e-7At2g38000chaperone protein dnaJ-relatedO.I.H.G.S.X.
0.4053.10.96Contig2826_atContig2826--1e-21At3g44110ATJ3O.I.H.G.S.X.
0.4053.10.98Contig570_s_atContig570--3e-23At1g09200histone H3O.I.H.G.S.X.
0.3647.10.97HVSMEn0024L14r2_atHVSMEn0024L14r2--6e-1At3g04170germin-like protein, putativeO.I.H.G.S.X.
0.3647.10.92Contig4244_atContig4244--4e-9At1g80360aminotransferase class I and II family proteinO.I.H.G.S.X.
0.3545.10.92Contig6603_atContig6603--2e+0At3g29000calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3545.10.95Contig7569_atContig7569--9e-7At1g16190DNA repair protein RAD23, putativeO.I.H.G.S.X.
0.3342.60.91rbags14a22_atrbags14a22--3e+0At2g26180IQD6 (IQ-domain 6)O.I.H.G.S.X.
0.3342.60.95Contig4365_atContig4365--5e-39At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.H.G.S.X.
0.3342.60.96Contig8375_atContig8375--1e-37At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2935.50.95Contig6862_s_atContig6862--3e-1At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2732.10.94Contig14618_atContig14618--1e+0At1g49140NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.2732.10.96Contig8956_atContig8956--7e-3At1g64900CYP89A2 (CYTOCHROME P450 89A2)O.I.H.G.S.X.
0.2732.10.96Contig6819_atContig6819--8e-13At5g05820phosphate translocator-relatedO.I.H.G.S.X.
0.2630.40.90Contig15296_s_atContig15296--9e-1At1g66780MATE efflux family proteinO.I.H.G.S.X.
0.2630.40.96Contig8511_atContig8511--5e+0At5g44850-O.I.H.G.S.X.
0.2630.40.94Contig12841_atContig12841--3e-5At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.2630.40.95Contig9955_atContig9955--3e-1At2g23310ATRER1C1O.I.H.G.S.X.
0.2528.90.94Contig8605_atContig8605--1e+0At3g61571unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig6150_atContig6150--3e-2At3g56290unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.494.8GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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