Co-expression analysis

Gene ID Contig2946_at
Gene name
Homology with ArabidopsisSimilar to At5g03630: ATMDAR2 (HF=5e-5)
Module size 6 genes
NF 0.61
%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig2946_atContig2946--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.8092.50.97Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.6784.70.96Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.5066.90.97Contig3963_s_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.4863.20.96Contig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.3240.30.97Contig5777_atContig5777--3e-11At5g47570unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.494.8GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1708.1.S1_at, orthologous to the query gene, Contig2946_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4048.5Zm.1708.1.S1_atAt5g03630--1e-12At3g52880monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.6077.8Zm.7135.1.S1_atAt5g03630Bet v I allergen-2e+0At1g70990proline-rich family proteinO.I.H.G.S.X.
0.5065.7Zm.4954.1.A1_atAt5g03630ischemia/reperfusion inducible protein-2e+0At5g64400-O.I.H.G.S.X.
0.3336.0Zm.7818.1.A1_atAt5g03630hypothetical protein LOC100272362-2e+1Atmg01030-O.I.H.G.S.X.
0.3336.0Zm.18058.1.A1_atAt5g03630--3e-1At2g31215basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1710.6Zm.1564.1.A1_atAt5g03630hypothetical protein LOC100275083-5e-1At1g15350unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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