Co-expression analysis

Gene ID Contig2946_at
Gene name
Homology with ArabidopsisSimilar to At5g03630: ATMDAR2 (HF=5e-5)
Module size 6 genes
NF 0.61
%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig2946_atContig2946--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.8092.50.97Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.6784.70.96Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.5066.90.97Contig3963_s_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.4863.20.96Contig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.3240.30.97Contig5777_atContig5777--3e-11At5g47570unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.494.8GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0557600, orthologous to the query gene, Contig2946_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7391.1Os08g0557600At5g03630-Monodehydroascorbate reductase (EC 1.6.5.4) (MDAR)(Ascorbate free radical reductase) (AFR reductase)2e-20At5g03630ATMDAR2O.I.H.G.S.X.
0.4558.8Os10g0457600At5g03630-Acetyl-CoA C-acyltransferase (3-ketoacyl-coathiolase b) (EC 2.3.1.16) (Fragment)2e-20At2g33150PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)O.I.H.G.S.X.
0.4051.1Os04g0674400At5g03630-Protein of unknown function DUF689 family protein2e-1At3g57670NTT (NO TRANSMITTING TRACT)O.I.H.G.S.X.
0.4051.1Os05g0437900At5g03630-Tubby family protein2e-5At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)O.I.H.G.S.X.
0.3948.3Os03g0319300At5g03630-Calmodulin TaCaM1-1 (Calmodulin TaCaM1-2)(Calmodulin TaCaM1-3) (Calmodulin TaCaM3-1) (CalmodulinTaCaM3-2) (Calmodulin TaCaM3-3) (Calmodulin TaCaM4-1)1e-75At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.3236.3Os11g0600700At5g03630-Zn-finger, RING domain containing protein1e-8At5g62460zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3236.3Os08g0459600At5g03630-12-oxophytodienoate reductase 3 (EC 1.3.1.42)2e-7At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.3134.5Os07g0581000At5g03630-Conserved hypothetical protein6e-8At1g21070transporter-relatedO.I.H.G.S.X.
0.2727.5Os02g0797600At5g03630-Conserved hypothetical protein8e-5At2g15270unknown proteinO.I.H.G.S.X.
0.2219.4Os01g0157900At5g03630-Uncharacterized Cys-rich domain containing protein6e-4At2g37110unknown proteinO.I.H.G.S.X.
0.1611.3Os03g0567600At5g03630-Protein of unknown function DUF563 family protein1e-3At5g58000-O.I.H.G.S.X.
0.1611.3Os10g0544900At5g03630-Protein phosphatase 2C-like protein5e-18At5g66080protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.116.5Os06g0133900At5g03630-5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment)2e-35At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.116.5Os07g0568300At5g03630-ZF protein (Fragment)1e-6At5g58620zinc finger (CCCH-type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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