Co-expression analysis

Gene ID Contig2946_at
Gene name
Homology with ArabidopsisSimilar to At5g03630: ATMDAR2 (HF=5e-5)
Module size 6 genes
NF 0.61
%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig2946_atContig2946--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.8092.50.97Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.6784.70.96Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.5066.90.97Contig3963_s_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.4863.20.96Contig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.3240.30.97Contig5777_atContig5777--3e-11At5g47570unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.494.8GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7497.2.S1_s_at, orthologous to the query gene, Contig2946_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.1Gma.7497.2.S1_s_atAt5g03630OAS-TL4 cysteine synthase-6e-21At3g59760OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)O.I.H.G.S.X.
0.7589.5Gma.2654.2.S1_a_atAt5g03630--2e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.6786.1Gma.7906.2.S1_atAt5g03630--2e-12At1g63610unknown proteinO.I.H.G.S.X.
0.6786.1Gma.665.2.S1_a_atAt5g03630--4e+0At5g45690unknown proteinO.I.H.G.S.X.
0.6483.4GmaAffx.76235.2.S1_atAt5g03630--9e-1At3g11160unknown proteinO.I.H.G.S.X.
0.4360.6GmaAffx.70388.1.S1_atAt5g03630--4e+0At2g47810NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)O.I.H.G.S.X.
0.3243.7GmaAffx.91543.1.S1_s_atAt5g03630--4e-3At2g24390-O.I.H.G.S.X.
0.3142.2GmaAffx.78801.1.S1_atAt5g03630--5e-6At1g74640unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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