Co-expression analysis

Gene ID Contig2940_s_at
Gene name
Homology with ArabidopsisSimilar to At2g47380: cytochrome c oxidase subunit Vc family protein / COX5C family protein (HF=5e-6)
Module size 6 genes
NF 0.56
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.97Contig2940_s_atContig2940--5e-6At2g47380cytochrome c oxidase subunit Vc family protein / COX5C family proteinO.I.H.G.S.X.
0.6784.70.98Contig15424_atContig15424--2e+1At1g03950VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)O.I.H.G.S.X.
0.5572.00.97Contig372_s_atContig372--4e+0At3g17130invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5066.90.97Contig6283_atContig6283--1e-1At3g60410unknown proteinO.I.H.G.S.X.
0.4053.10.97HW08B21u_s_atHW08B21u--1e+1At5g23903unknown proteinO.I.H.G.S.X.
0.3138.60.97Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.199.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.499.4GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.099.4GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.799.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.499.0GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.898.3GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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