Co-expression analysis

Gene ID Contig2883_s_at
Gene name
Homology with ArabidopsisSimilar to At1g77840: eukaryotic translation initiation factor 5, putative / eIF-5, putative (HF=5e-15)
Module size 6 genes
NF 0.08
%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.78Contig2883_s_atContig2883--5e-15At1g77840eukaryotic translation initiation factor 5, putative / eIF-5, putativeO.I.H.G.S.X.
0.1716.90.84Contig10694_atContig10694--8e-1At1g11112unknown proteinO.I.H.G.S.X.
0.119.40.89Contig9002_atContig9002--7e-20At1g54590splicing factor Prp18 family proteinO.I.H.G.S.X.
0.064.80.87Contig15052_atContig15052--5e-23At3g48750CDC2 (CELL DIVISION CONTROL 2)O.I.H.G.S.X.
0.043.40.78Contig126_atContig126--1e-100At4g40040histone H3.2O.I.H.G.S.X.
0.032.60.87Contig17671_atContig17671--2e+0At4g33130-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.697.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.197.3GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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