Co-expression analysis

Gene ID	Contig2883_s_at
Gene name
Homology with Arabidopsis	Similar to At1g77840: eukaryotic translation initiation factor 5, putative / eIF-5, putative (HF=5e-15)
Module size	6 genes
NF	0.08
%ile	10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.78	Contig2883_s_at	Contig2883	-	-	5e-15	At1g77840	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.84	Contig10694_at	Contig10694	-	-	8e-1	At1g11112	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.89	Contig9002_at	Contig9002	-	-	7e-20	At1g54590	splicing factor Prp18 family protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.87	Contig15052_at	Contig15052	-	-	5e-23	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.78	Contig126_at	Contig126	-	-	1e-100	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.87	Contig17671_at	Contig17671	-	-	2e+0	At4g33130	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6	97.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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