Co-expression analysis

Gene ID Contig2857_at
Gene name
Homology with ArabidopsisSimilar to At1g66680: AR401 (HF=4e-3)
Module size 6 genes
NF 0.63
%ile 84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.88Contig2857_atContig2857--4e-3At1g66680AR401O.I.H.G.S.X.
0.6784.70.85Contig4811_atContig4811--5e-3At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.5572.00.88Contig2858_s_atContig2858--1e-3At1g66680AR401O.I.H.G.S.X.
0.5066.90.88Contig11077_atContig11077--7e+0At5g65320basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4458.90.87Contig14526_atContig14526--2e-16At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.4053.10.88Contig4810_atContig4810--2e-2At4g00750dehydration-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.198.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.796.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4148.1.S1_at, orthologous to the query gene, Contig2857_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.4148.1.S1_atAt1g66680--6e+0At4g00525unknown proteinO.I.H.G.S.X.
0.5065.7Zm.8053.1.A1_atAt1g66680hypothetical protein LOC100273786 /// xaa-Pro aminopeptidase 1-6e-14At4g36760ATAPP1O.I.H.G.S.X.
0.4352.8Zm.13669.1.A1_atAt1g66680--2e-1At3g26420ATRZ-1AO.I.H.G.S.X.
0.3538.9Zm.9564.1.S1_atAt1g66680Transcribed sequence 1087 protein-8e-1At3g01323unknown proteinO.I.H.G.S.X.
0.3233.4Zm.19335.1.A1_atAt1g66680hypothetical protein LOC100279445-6e-4At3g22440hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2928.1Zm.8617.1.A1_atAt1g66680hypothetical protein LOC100194322-2e+0At4g29810ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)O.I.H.G.S.X.
0.2521.3Zm.9888.2.A1_a_atAt1g66680--5e+0At4g16510YbaK/prolyl-tRNA synthetase-relatedO.I.H.G.S.X.
0.2318.6Zm.5058.1.A1_atAt1g66680hypothetical protein LOC100217195-4e+0At4g33960unknown proteinO.I.H.G.S.X.
0.2216.9Zm.6414.1.A1_atAt1g66680--5e-5At3g53500zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.2014.2Zm.6453.1.S1_atAt1g66680--3e-1At5g33390glycine-rich proteinO.I.H.G.S.X.
0.125.9Zm.4883.1.S1_atAt1g66680hypothetical protein LOC100216906-4e-3At2g37650scarecrow-like transcription factor 9 (SCL9)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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