Co-expression analysis

Gene ID	Contig2857_at
Gene name
Homology with Arabidopsis	Similar to At1g66680: AR401 (HF=4e-3)
Module size	6 genes
NF	0.63
%ile	84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.88	Contig2857_at	Contig2857	-	-	4e-3	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	Contig4811_at	Contig4811	-	-	5e-3	At2g45750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig2858_s_at	Contig2858	-	-	1e-3	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig11077_at	Contig11077	-	-	7e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig4810_at	Contig4810	-	-	2e-2	At4g00750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.4148.1.S1_at, orthologous to the query gene, Contig2857_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.4148.1.S1_at	At1g66680	-	-	6e+0	At4g00525	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.8053.1.A1_at	At1g66680	hypothetical protein LOC100273786 /// xaa-Pro aminopeptidase 1	-	6e-14	At4g36760	ATAPP1	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.13669.1.A1_at	At1g66680	-	-	2e-1	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.9564.1.S1_at	At1g66680	Transcribed sequence 1087 protein	-	8e-1	At3g01323	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.19335.1.A1_at	At1g66680	hypothetical protein LOC100279445	-	6e-4	At3g22440	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.8617.1.A1_at	At1g66680	hypothetical protein LOC100194322	-	2e+0	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.9888.2.A1_a_at	At1g66680	-	-	5e+0	At4g16510	YbaK/prolyl-tRNA synthetase-related	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.5058.1.A1_at	At1g66680	hypothetical protein LOC100217195	-	4e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.6414.1.A1_at	At1g66680	-	-	5e-5	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.6453.1.S1_at	At1g66680	-	-	3e-1	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.4883.1.S1_at	At1g66680	hypothetical protein LOC100216906	-	4e-3	At2g37650	scarecrow-like transcription factor 9 (SCL9)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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