Co-expression analysis

Gene ID	Contig2857_at
Gene name
Homology with Arabidopsis	Similar to At1g66680: AR401 (HF=4e-3)
Module size	6 genes
NF	0.63
%ile	84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.88	Contig2857_at	Contig2857	-	-	4e-3	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	Contig4811_at	Contig4811	-	-	5e-3	At2g45750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig2858_s_at	Contig2858	-	-	1e-3	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig11077_at	Contig11077	-	-	7e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig4810_at	Contig4810	-	-	2e-2	At4g00750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.23095.1.S1_at, orthologous to the query gene, Contig2857_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.23095.1.S1_at	At1g66680	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.93043.1.S1_at	At1g66680	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.72383.1.S1_at	At1g66680	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.4562.1.S1_s_at	At1g66680	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.163113.1.S1_s_at	At1g66680	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.158776.1.S1_s_at	At1g66680	hypothetical protein	-	1e+0	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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